Available on Windows!

A New Era of RNA-Seq Data Analysis

Analyze transcriptomic data for free on your own laptop. No coding required, total privacy, and publication-ready visualizations in minutes.

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Global Community

Trusted Worldwide

Join researchers all around the world using Jetomics.

Privacy First

Why researchers choose Jetomics

Bioinformatics shouldn't require compromising privacy or waiting in cloud queues.

Total Privacy

Your data never leaves your computer. We function mostly offline, ensuring your proprietary genomic data remains yours.

Zero Wait Times

Forget about server queues or requesting demo access. Download the app and start analyzing immediately on your own hardware.

Code-Free GUI

No R, Python, and command line tools are required. We wrap powerful packages into an intuitive desktop experience designed for biologists, onclogists, and bioinformaticians in a hurry.

Complete Pipeline

Bulk RNA-Seq Analysis

From raw counts to publication figures. We've grouped the powerful features you need into a seamless workflow.

Fast Pseudoalignment

Bypass the need for large alignment files. Quantify transcript abundance in minutes using the integrated Salmon engine.

  • Local Execution: Run Salmon locally on your machine with optimized multi-threading.
  • Transcriptome Indexing: Easily build or import indices for human, mouse, or custom genomes.
  • Lightweight: Drastically reduce storage requirements compared to BAM/SAM files.
Salmon Alignment

Seamless Data Integration

Combine quantification files effortlessly. Whether you have 5 samples or 100+, merge them into a unified matrix instantly.

  • TXimport Integration: Automatically summarize transcript-level counts to gene-level counts using standard libraries.
  • Raw .sf Merging: Merge raw Salmon output files directly if you prefer transcript-level analysis.
Data Merging

Pre-processing & QC

Instantly assess data quality before you begin.

  • Automated Filtering: Remove low count genes based on Counts Per Million and Min Samples scores.
  • Normalization: One-click LogCPM, or Median of Ratios normalization.
  • Batch Correction: Identify and remove batch effects with instant PCA visualization.
  • Sample Quality: Identify the correlation between samples and filter out samples based on sequencing depth and library complexity.
QC Dashboard

Differential Expression & Enrichment

Run industry-standard methods (DESeq2, edgeR, Limma) without writing a single line of code.

  • Comparison Wizard: define complex contrasts effortlessly.
  • Interactive Plots: Zoom into Volcano plots and select genes of interest.
  • VENN Diagrams: Find the DEGs shared beetween up to 3 datasets, select genes of interest, and perform downstream analysis on them.
  • Pathway Analysis: Integrated GSEA and ORA (GO/KEGG/TF/Cell-Types & Markers/Drugs & Diseases) enrichment.
Differential Expression
Coming Soon

Complete FastQ Pipeline

An end-to-end solution for raw sequencing data. Go from .fastq files to count matrices without leaving the app, installing gazillions of command line tools and without writing multiple-line complicated commands.

  • Read QC: Integrated FastQC for immediate quality assessment.
  • Trimming: Adapter trimming and quality filtering via Trimmomatic.
  • Full Alignment: Traditional alignment with HISAT2 for deep analysis.
FastQ Pipeline
Coming Soon

Single-Cell Pipeline

Analyze up to 500k cells seamlessly on a standard laptop. Smart memory management meets powerful analytics.

Clustering & Annotation
Identify cell types using graph-based clustering. Annotate clusters with marker genes automatically or manually.
Interactive Exploration
Explore UMAP/t-SNE embeddings interactively. Select specific clusters to re-analyze or subset.
Hardware Accelerated
Smart memory and CPU management, with optional GPU-assisted acceleration for large datasets.

Get your free license today.

Download the latest Jetomics beta version and claim your free license!

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